Table S2. Prokaryotic Members of the Bestrophin Family

 

Abbreviation

Organism

Organismal Type1

Residues

(# aas)

# of TMS (WHAT)

# of TMS (HMMTOP)

# of TMS (TMHMM)

# of TMS (Phobius)

Average # of TMSs2

gi Number3

Avi

Azotobacter vinelandii

g

306

4

4

3

4

3.8

23102496

Bba

Bdellovibrio bacteriovorus

d

310

4

4

3

4

3.8

39575684

Bfu1

Burkholderia fungorum

b

441

4

4

3

3

3.5

22984166

Bfu2

Burkholderia fungorum

b

303

3

3

2

5

3.3

22988141

Bpa

Bordetella parapertussis

b

318

4

4

3

3

3.5

33598866

Chu1

Cytophaga hutchinsonii

cytophaga

313

4

5

4

4

4.3

23135753

Chu2

Cytophaga hutchinsonii

cytophaga

290

4

5

4

4

4.3

23135521

Cvi

Chromobacterium violaceum

b

305

3

3

3

2

2.8

34496087

Dar

Dechloromonas aromatica

b

306

3

3

3

3

3.0

41724638

Eco

Escherichia coli

g

321

4

3

3

4

3.5

26247799

Mlo

Mesorhizobium loti

a

309

3

3

3

3

3.0

13473700

Mma

Magnetospirillum magnetotacticum

a

283

3

3

2

2

2.5

23012667

Nos

Nostoc sp. PCC7120

cyanobacteria

307

5

5

4

4

4.5

17230479

Npu1

Nostoc punctiforme

cyanobacteria

298

5

5

2

4

4.0

23125456

Npu2

Nostoc punctiforme

cyanobacteria

306

4

4

3

4

3.8

23128679

Pfl1

Pseudomonas fluorescens

g

299

4

4

3

4

3.8

23062895

Pfl2

Pseudomonas fluorescens

g

282

4

4

3

4

3.8

23063289

Ppu

Pseudomonas putida

g

299

4

4

3

4

3.8

26991282

Psy1

Pseudomonas syringae pv tomatoe

g

295

4

4

3

4

3.8

28872607

Psy2

Pseudomonas syringae pv tomatoe

g

314

4

4

3

4

3.8

28868579

Rme

Ralstonia metallidurans

g

312

4

3

3

3

3.3

22976856

Rpa

Rhodopseudomonas palustris

a

307

4

4

3

4

3.8

39936109

Rso

Ralstonia solanacearum

b

306

4

4

3

2

3.3

17548131

Sty

Salmonella typhimurium

g

315

4

3

3

4

3.5

16764872

Syn

Synechocystis sp. PCC6803

cyanobacteria

307

4

3

0

4

2.8

20140487

Tel

Thermosynechococcus

cyanobacteria

326

4

4

4

4

4.0

22299752

Ter1

Trichodesmium erythraeum

cyanobacteria

318

4

4

3

4

3.8

23039488

Ter2

Trichodesmium erythraeum

cyanobacteria

300

4

4

3

4

3.8

23042822

Xax

Xanthomonas axonopodis

g

296

4

4

2

4

3.5

21244159

Xca

Xanthomonas campestris

g

294

4

4

2

4

3.5

21232717

 

1Proteobacteria are indicated according to their grouping (a, b, g, d). For all others, the full organismal type is indicated. Closely related sequences (>95% identical) are represented only once.

 

2Values reported represent the averages of values obtained with four different programs (see Methods section). The values obtained with each of the four programs can be found in table S2 on our website.

 

3gi number, GenBank index number