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Table S3 |
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Selected members of the
CDF family included in this study |
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Abbreviation |
Organism |
Size |
GI No. |
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Cluster 1 |
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|
|
Sus1 |
Solibacter usitatus
Ellin6076 |
312 |
116626891 |
|
|
Aba1 |
Acidobacteria bacterium
Ellin345 |
312 |
94971502 |
|
|
Mca1 |
Methylococcus
capsulatus str. Bath |
314 |
53803773 |
|
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Dsh1 |
Dinoroseobacter shibae
DFL 12 |
328 |
159046306 |
|
|
|
|
|
|
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Cluster 2 |
|
|
|
|
|
Csa1 |
Chromohalobacter
salexigens DSM 3043 |
327 |
92112528 |
|
|
Oal1 |
Oceanicaulis alexandrii
HTCC2633 |
321 |
83859617 |
|
|
Mlo1 |
Mesorhizobium loti
MAFF303099 |
365 |
13472628 |
|
|
Lag1 |
Labrenzia aggregata IAM
12614 |
323 |
118590331 |
|
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Oan1 |
Ochrobactrum anthropi
ATCC 49188 |
352 |
153010549 |
|
|
Pat1 |
Pectobacterium
atrosepticum SCRI1043 |
320 |
50120319 |
|
|
Neu1 |
Nitrosomonas eutropha
C91 |
318 |
114331283 |
|
|
Gbe1 |
Granulibacter
bethesdensis CGDNIH1 |
344 |
114327161 |
|
|
Pbe1 |
Parvularcula
bermudensis HTCC2503 |
339 |
84703758 |
|
|
Aph1 |
Anaplasma
phagocytophilum HZ |
301 |
88606868 |
|
|
Wen1 |
Wolbachia endosymbiont
of Drosophila ananassae |
322 |
58698457 |
|
|
Mbo1 |
Candidatus
Methanoregula boonei 6A8 |
317 |
154150521 |
|
|
Mth1 |
Methanosaeta
thermophila PT |
298 |
116753644 |
|
|
Gbe2 |
Geobacter bemidjiensis
Bem |
335 |
145617404 |
|
|
|
|
|
|
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Cluster 3 |
|
|
|
|
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Tko1 |
Thermococcus
kodakarensis KOD1 |
297 |
57641944 |
|
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Pfu1 |
Pyrococcus furiosus DSM
3638 |
295 |
18976930 |
|
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Fno1 |
Fervidobacterium
nodosum Rt17-B1 |
324 |
154249455 |
|
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Cac1 |
Clostridium
acetobutylicum ATCC 824 |
303 |
15895802 |
|
|
Fba1 |
Flavobacteriales
bacterium ALC-1 |
305 |
163786940 |
|
|
Nsp2 |
Nitratiruptor sp.
SB155-2 |
301 |
152989830 |
|
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Lhe1 |
Lactobacillus
helveticus DPC 4571 |
299 |
161506912 |
|
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Lre1 |
Lactobacillus reuteri
100-23 |
306 |
92090163 |
|
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Pmo1 |
Petrotoga mobilis SJ95 |
300 |
160901579 |
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Tme1 |
Thermosipho
melanesiensis BI429 |
294 |
150021129 |
|
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Sac1 |
Syntrophus
aciditrophicus SB |
323 |
85860924 |
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Dol1 |
Desulfococcus
oleovorans Hxd3 |
307 |
158522894 |
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Pde1 |
Paracoccus
denitrificans PD1222 |
311 |
69934514 |
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Sfr1 |
Shewanella
frigidimarina NCIMB 400 |
300 |
114564623 |
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Orf1 |
alpha proteobacterium
BAL199 |
319 |
163792589 |
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Rba1 |
Rhodopirellula baltica
SH 1 |
331 |
32475575 |
|
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Oin1 |
Oceanibulbus indolifex
HEL-45 |
322 |
163744499 |
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Eli1 |
Erythrobacter litoralis
HTCC2594 |
317 |
85373709 |
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|
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Cluster 4 |
|
|
|
|
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Chu1 |
Cytophaga hutchinsonii
ATCC 33406 |
303 |
110638100 |
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Lin1 |
Leptospira interrogans
serovar Lai str. 56601 |
308 |
24216712 |
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Lme1 |
Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293 |
305 |
116617464 |
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Afa1 |
Alcaligenes faecalis |
303 |
42741699 |
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Rpa1 |
Rhodopseudomonas
palustris BisB5 |
372 |
91974962 |
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Van1 |
Vibrio angustum S14 |
301 |
90578930 |
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Gox1 |
Gluconobacter oxydans
621H |
351 |
58040060 |
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Bph1 |
Burkholderia phymatum
STM815 |
373 |
118029236 |
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Lpn1 |
Legionella pneumophila
str. Lens |
307 |
54295577 |
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Rgr1 |
Rickettsiella grylli |
298 |
160871716 |
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Cluster 5 |
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Aae1 |
Aquifex aeolicus VF5 |
308 |
15606352 |
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Emi1 |
Elusimicrobium minutum
Pei191 |
327 |
163692265 |
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Gka1 |
Geobacillus
kaustophilus HTA426 |
315 |
56419116 |
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Pcr1 |
Psychrobacter
cryohalolentis K5 |
398 |
93006832 |
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Bli1 |
Bacillus licheniformis
ATCC 14580 |
311 |
52081757 |
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Ccu1 |
Campylobacter curvus
525.92 |
378 |
154174068 |
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Ssa1 |
Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305 |
321 |
73662044 |
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Sau1 |
Staphylococcus aureus |
326 |
3445567 |
|
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Sha1 |
Staphylococcus
haemolyticus JCSC1435 |
316 |
70725889 |
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Bsp2 |
Bacillus sp. B14905 |
315 |
126652939 |
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Ame1 |
Apis mellifera |
186 |
110772491 |
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Nsp1 |
Nodularia spumigena CCY
9414 |
326 |
119511265 |
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Msu1 |
Mannheimia
succiniciproducens MBEL55E |
229 |
52425489 |
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Cluster 6 |
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Sce1 |
Sorangium cellulosum
'So ce 56' |
363 |
162455933 |
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Asp1 |
Anaeromyxobacter sp.
Fw109-5 |
342 |
153004924 |
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Mfe1 |
Mariprofundus
ferrooxydans PV-1 |
301 |
114778756 |
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Cvi1 |
Chromobacterium
violaceum ATCC 12472 |
336 |
34499132 |
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Psp1 |
Polynucleobacter sp.
QLW-P1DMWA-1 |
626 |
145589012 |
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Mfl1 |
Methylobacillus
flagellatus KT |
325 |
91776158 |
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Cbu1 |
Coxiella burnetii
'MSU Goat Q177' |
297 |
153207228 |
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Asp3 |
Azoarcus sp. BH72 |
410 |
119897709 |
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Cluster 7 |
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Cdi1 |
Corynebacterium
diphtheriae NCTC 13129 |
307 |
38233695 |
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Cje1 |
Corynebacterium
jeikeium K411 |
373 |
68536380 |
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Mpo1 |
Methylobacterium populi
BJ001 |
313 |
163810199 |
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Dra1 |
Deinococcus radiodurans
R1 |
325 |
15806122 |
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Jsp1 |
Janthinobacterium sp.
Marseille |
316 |
152983103 |
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Xor1 |
Xanthomonas oryzae pv.
oryzae KACC10331 |
331 |
58581470 |
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Str1 |
Salinispora tropica
CNB-440 |
305 |
145595903 |
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Rer1 |
Rhodococcus
erythropolis |
316 |
33867154 |
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Nsp3 |
Nocardioides sp. JS614 |
305 |
119716445 |
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Rsp1 |
Rhodococcus sp. RHA1 |
308 |
111022505 |
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Asp2 |
Arthrobacter sp. FB24 |
308 |
116668957 |
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Tfu1 |
Thermobifida fusca YX |
300 |
72162699 |
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Kra1 |
Kineococcus
radiotolerans SRS30216 |
356 |
157283859 |
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Ace1 |
Acidothermus
cellulolyticus 11B |
306 |
117928428 |
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Aod1 |
Actinomyces
odontolyticus ATCC 17982 |
343 |
154507747 |
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Bad1 |
Bifidobacterium
adolescentis ATCC 15703 |
313 |
119026134 |
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Rxy1 |
Rubrobacter
xylanophilus DSM 9941 |
314 |
108803440 |
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Sav1 |
Streptomyces
avermitilis MA-4680 |
371 |
29833590 |
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Cluster 8 |
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Hma1 |
Haloarcula marismortui
ATCC 43049 |
311 |
55376483 |
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Tva1 |
Trichomonas vaginalis
G3 |
436 |
123392128 |
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Ath1 |
Arabidopsis thaliana |
300 |
4895164 |
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Vvi1 |
Vitis vinifera |
521 |
157345543 |
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Cel3 |
Caenorhabditis elegans |
746 |
32564488 |
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Clu1 |
Canis lupus familiaris |
766 |
73949652 |
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Tca2 |
Tribolium castaneum |
346 |
91094123 |
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Cluster 9 |
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Tth1 |
Tetrahymena thermophila
SB210 |
352 |
118399782 |
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Ecu1 |
Encephalitozoon
cuniculi GB-M1 |
334 |
19074951 |
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Cel1 |
Caenorhabditis elegans |
410 |
17555794 |
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Tca3 |
Tribolium castaneum |
337 |
91085835 |
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Cel2 |
Caenorhabditis elegans |
382 |
17569845 |
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Tca1 |
Tribolium castaneum |
429 |
91076070 |
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Aae2 |
Aedes aegypti |
365 |
157116519 |
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Xla1 |
Xenopus laevis |
375 |
147898921 |
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Bta1 |
Bos taurus |
611 |
76611372 |
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Ddi1 |
Dictyostelium
discoideum AX4 |
543 |
66810407 |
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Ath2 |
Arabidopsis thaliana |
432 |
42566037 |
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Cluster 10 |
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Mba1 |
Methanosarcina barkeri
str. Fusaro |
301 |
73670713 |
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Asp4 |
Algoriphagus sp. PR1 |
277 |
126648478 |
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Sde1 |
Shewanella
denitrificans OS217 |
365 |
91793322 |
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Ilo1 |
Idiomarina loihiensis
L2TR |
295 |
56460742 |
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Mma1 |
Microscilla marina ATCC
23134 |
331 |
124002466 |
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Pgi1 |
Porphyromonas
gingivalis W83 |
321 |
34541087 |
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Bsp1 |
Bacillus sp. SG-1 |
286 |
149180593 |
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Efa1 |
Enterococcus faecium |
307 |
42521341 |
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Lla1 |
Lactococcus lactis
subsp. cremoris MG1363 |
305 |
125623731 |
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Sgo1 |
Streptococcus gordonii
str. Challis substr. CH1 |
296 |
157151626 |
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Cluster 11 |
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Dsp1 |
Dehalococcoides sp.
CBDB1 |
316 |
73747987 |
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Sau2 |
Staphylococcus aureus
subsp. aureus str. Newman |
354 |
151220326 |
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Kst1 |
Candidatus Kuenenia
stuttgartiensis |
302 |
91200122 |
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Abu1 |
Arcobacter butzleri
RM4018 |
351 |
157736605 |
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Cje2 |
Campylobacter jejuni
subsp. jejuni CG8486 |
324 |
148926168 |
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Cfe1 |
Campylobacter fetus
subsp. fetus 82-40 |
314 |
118474270 |
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Lbo1 |
Leptospira
borgpetersenii serovar Hardjo-bovis L550 |
320 |
116328261 |
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Pae1 |
Prosthecochloris
aestuarii DSM 271 |
319 |
68553291 |
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